Or is it that the class system of the knighted class in Europe was entirely different from the samurai class in Japan?
You may need to clarify your question a bit more. Are you asking if the class system and power structure in medieval Europe somehow prevented knights from taking up arms against those they had sworn fealty to? Do you simply mean to ask if they ever did so, or are you looking for a more direct comparison to a specific conflict in Japan? If so, which conflict?