From my understanding, Catholicism in the Netherlands was banned/perecuted after the Eighty Year's War, but today around 20% of the Netherlands' population is still Catholic (and was 40% in the 1960s). How did this large Catholic minority remain, a minority that other northern European Protestant countries don't have? Why didn't these Catholics flee to other Catholic countries like Belgium?
Catholicism was never banned in The Netherlands. Quite the opposite. The Eighty Years war had a strong religious component in it but the leaders of the revolution didn't want the war of independence from Spain become a religious civil war after the Spanish had gone.
Therefore they added in the declaration of independence an article that made religion a pure personal choice for everybody to make on their own conscience without fear of prosecution. While Calvinism became the official religion of the republic the Catholics but also the Jews were free to practice there religion as long as they did not do that publicly. Which led to 'hidden' churches like https://www.opsolder.nl/en
This also led to a lot of refugees coming from other countries like Jews from Spain and Portugal and Huguenots from France.