While I cannot speak to the rise of the specific conspiracies you're referring to, I have recently read two books that cover right wing politics in the 1940s-1960s and would like to challenge the premise that the conspiracies of the 90s were actually all that distinct from ones that came before.

So the first thing to note is that political conspiracies targeting specific individuals were completely mainstream as early as the 1940s. In the early Cold War Era of American politics, many Republican politicians routinely made political hay by associating their typically-Democrat rivals with communism (though Democrats often perpetuated similar conspiracies as well).

Let's take a look at the rise of Richard Nixon - a mainstream Republican throughout his career, consistently on the Right, but rarely on the Far Right. From his earliest political race, he fully utilized the power of conspiracy to get an edge over his opponent. Throughout his 1946 congressional campaign, he made his opponent's supposed friendliness to communism a focal point of the election. I say 'supposed' because his opponent Jerry Voorhis was certainly not friendly to communism - he had served on the House Unamerican Activities Committee. Regardless of the truth, Nixon relied on these falsehoods to get a political edge, his campaign running an ad saying "A vote for Nixon is a vote against the Communist-Dominated PAC and it's slush fund". And that's despite the PAC in question not having endorsed Voorhis nor being communist dominated. Nonetheles, this move was very successful as it played into voters' fears of a communist corruption of the US government.

Now that on its own might sound like the normal negative smear politics of the time, rather than the type of conspiracy following the Clinton administration in the 90s. But I would argue that it's just one example of how mainstream this type of conspiratorial thinking was in the politics of the day. However this can be seen as fairly 'surface level' conspiracy I suppose, as it played off fears that had some basis in reality - there certainly were communists and communist sympathizers in America. The conspiracy theories were only wrong (but still very wrong) about the magnitude of their influence, not whether or not they were present.

So next let's talk about the really deep conspiracies of Cold War America. Namely Robert Welch and the John Birch Society. Welch and the JBS are going to seem much more familiar to someone who's followed the Clinton/ QAnon conspiracies. They were very "out-there" - dismissed by most as insane, but believed by the dedicated few to be gospel.

The basis of the JBS was still that there was a concerted communist effort to infiltrate and transform American society. What set the JBS apart was just how far Welch took it. He was adamant that every big name politician was in on it. He particularly made a point to single out every president of his time - FDR, Harry Truman, Dwight Eisenhower, JFK, and LBJ. He fully believed that each and every one had deliberately turned control of their administrations over to the USSR. Of Eisenhower, Welch wrote that he had been "knowingly receiving and abiding by Communist orders, and consciously serving the Communist conspiracy, for all his adult life". Similar quotes can be found for the rest.

And you would be surprised the extent to which people bought in to the JBS conspiracies. By 1964 the organization had 200+ full time employees devoted to spreading their literature and organizing meetings, and while the number of Americans regularly attending their meetings can't be known for certain, it likely numbered in the tens of thousands. And in a 1964 national poll conducted by a group working for the Goldwater campaign, about 10% of respondents said they had a favorable view of the JBS.

Now I suppose I should digress, as this isn't the original topic of your question. However I hope that it provides some context as to the long history of right wing conspiracy in America. Hopefully you can see that while the details of said theories might change, the overall shape has remained fairly similar. As the Cold War ended in the early 90s, it only makes sense that the 'end-game' of the conspiracies has shifted away from communism, and more towards the next most enticing bogey-man. This might be why you feel there's a distinct change starting with the conspiracies Clinton faced, but again I argue that that's a minor detail changing, and not necessarily the overall type or prevalence of discourse.

The two books I've based this off of would be:

• Richard Nixon, by John A. Farrell

• Before the Storm: Barry Goldwater and the Unmaking of the American Consensus, by Rick Perlstein

First, I'd like to point out the essay "The Paranoid Style in American Politics" by Richard Hofstadter. The essay addresses this idea writing from 1964. It has some great primary sources of similar conspiracy-focused political discourse.

He offers examples from US history, far better than I could:

Here is Senator McCarthy, speaking in June 1951 about the parlous situation of the United States:

How can we account for our present situation unless we believe that men high in this government are concerting to deliver us to disaster? This must be the product of a great conspiracy on a scale so immense as to dwarf any previous such venture in the history of man. A conspiracy of infamy so black that, which it is finally exposed, its principals shall be forever deserving of the maledictions of all honest men. . . . What can be made of this unbroken series of decisions and acts contributing to the strategy of defeat? They cannot be attributed to incompetence. . . . The laws of probability would dictate that part of . . . [the] decisions would serve the country’s interest.

Now turn back fifty years to a manifesto signed in 1895 by a number of leaders of the Populist party:

As early as 1865–66 a conspiracy was entered into between the gold gamblers of Europe and America. . . . For nearly thirty years these conspirators have kept the people quarreling over less important matters while they have pursued with unrelenting zeal their one central purpose. . . . Every device of treachery, every resource of statecraft, and every artifice known to the secret cabals of the international gold ring are being used to deal a blow to the prosperity of the people and the financial and commercial independence of the country.

Next, a Texas newspaper article of 1855:

. . . It is a notorious fact that the Monarchs of Europe and the Pope of Rome are at this very moment plotting our destruction and threatening the extinction of our political, civil, and religious institutions. We have the best reasons for believing that corruption has found its way into our Executive Chamber, and that our Executive head is tainted with the infectious venom of Catholicism. . . . The Pope has recently sent his ambassador of state to this country on a secret commission, the effect of which is an extraordinary boldness of the Catholic church throughout the United States. . . . These minions of the Pope are boldly insulting our Senators; reprimanding our Statesmen; propagating the adulterous union of Church and State; abusing with foul calumny all governments but Catholic, and spewing out the bitterest execrations on all Protestantism. The Catholics in the United States receive from abroad more than $200,000 annually for the propagation of their creed. Add to this the vast revenues collected here. . . .

As for the focus on Clinton, he had become president after 12 years of GOP control of the executive. The Ruby Ridge indecent of August 1992 was in the news, because of the lawsuits. The Waco Siege was arguably the second biggest news story of the quarter after the presidential election, after the World Trade Center Bombings on February 26.

Many of these incidents, and specifically Waco, have been rolled into various Clinton conspiracies. The most famous, and ongoing, is the 'Clinton Body Count' which purports to show some pattern of mysterious deaths around the Clintons.

These Clinton Body Count lists have circulated for decades now, with one of the earliest CBCs is a list of 34 deaths from 1993 by Linda Thompson, who founded the American Justice Federation. This was remarked upon by the House of Representatives, from a letter penned by former Rep. William Dannemeyer.

Here is the record: https://www.govinfo.gov/content/pkg/CREC-1994-08-12/html/CREC-1994-08-12-pt1-PgE40.htm

There is a nice remark in the record from the Whitewater hearings:

Even at a time of great national anxiety and confusion, the intense, fecund and often bizarre charges leveled against Clinton are startling. He has unusually high negative ratings in many polls, but even that fails to explain fully the extreme nature of the charges leveled at him. ``These attacks have reached a level of inventive and viciousness that is unparalleled,'' complained White House counsel Lloyd Cutler during last week's Whitewater hearings.

So, this was unusual at the time, to stage a long running, far-ranging inquest into the sitting president's finances. In fact, this investigation would appoint Ken Starr as independent counsel and was the genesis of the Clinton-Lewinsky scandal in 1998. This then led to the eventual impeachment of Clinton.

Without getting too far into speculation, much of these conspiracy theories and the change in messaging of the Republican Party has been from the Republican Revolution of 1994. After the election the Senate had 11 new freshman GOP senators and a fresh majority in the House gaining 54 seats. This effectively ended the 'Conservative Coalition' of Republicans and (southern) Democrats who had controlled political power in the legislature since the New Deal era. This also allowed the GOP to control both houses with majorities against President Clinton's veto. These conspiracies are just part of this change in messaging and tactics, which were very successful in the '94 campaign season. This messaging also played nicely with the tumultuous beginning of the Clinton administration.

You can see a very good, point-by-point debunking of a Clinton Body Count list here on snopes: https://www.snopes.com/fact-check/clinton-body-bags/